Showing results for 
Search instead for 
Did you mean: 
Ground Controller Lvl 1
Message 1 of 2

Replicon - unable to use



I'm new to linux so my question might need a really simple answer.


I'm trying to use "RepliconWrench" (, and I want to use the "BedToILPS" script.

the example says that the code to run is something like this: "java -jar RepliconWrench.jar BedToIPLS -i refSeq.bed -o refSeqIPLS". when I try to use it, I get "Unable to access jarfile RepliconWrench.jar".

How can I run this?


Thank you,


1 Reply
Commander Lvl 2
Message 2 of 2

Re: Replicon - unable to use

The likeliest problem is you are not executing your command in the directory which contains the .jar file. I confirmed the .jar file works, at least on Windows.


On unix, files are case sensitive:

java -jar RepliconWrench.jar


Or there is some sort of permissions issue; try copying the .jar file to a different directory, and execute your command there.

Please follow-up to let us know how you made out. For good karma, mark a reply as the answer if it helped!