can not run fastqc command on windows

Hello. I am trying to run fastqc analysis in non-interactive mode on Windows. I installed FastQC and can run run_fastqc.bat in interactive mode. But I could not run the wrapper fastqc in cmd or ubuntu. cmd does not recongise chmod commamn). And ubuntu does not run run_fastqc.bat at all. I am new to Linux, just installed ubuntu and I can see the file run_fastqc.bat in directory (/mnt/c/Users/…). But ubuntu does not run run_fastqc. So my main question is how to run fastqc non-interactively on windows? But also I would like to know how to run it from ubuntu. Would be grateful for any feedback. Alex