What I want to do:

• Bring up 1 system based on matrix.os in step ‘build’

• Run N test cases using matrix.test-name in step ‘tests’

What I don’t want:

• Bringing up N system that each run 1 test case which is what I get now.

• Having to write a script to wrap all the test cases

Eventually, I want:

A. Bring up all the systems in matrix.os and matrix.python-version and matrix.cflag-options

B. Run N test cases on each of the systems in A

Can someone point me to a good example of how to do this or what I can try?

My action.yml below fails

name: Build
on:

push:

branches: [master]
jobs:

build:

name: Compile Code

runs-on: ${{ matrix.os }}

strategy:

matrix:

os: [ubuntu-latest]

#os: [ubuntu-latest, macOS-latest]

#os: [ubuntu-latest, macOS-latest, windows-latest]

#python-version: [3.6, 3.7]

python-version: [3.6]

cflag-options:

- ' -DENABLE_GEOFLOW=ON -DENABLE_BEM=ON -DGET_MSMS=ON -DENABLE_FETK=ON -DENABLE_PBSAM=OFF -DENABLE_PBAM=OFF -DENABLE_PYTHON=OFF -DBUILD_SHARED_LIBS=OFF -DCMAKE_C_FLAGS="-fPIC"'
- ' -DENABLE_GEOFLOW=OFF -DENABLE_BEM=OFF -DGET_MSMS=OFF -DENABLE_FETK=ON -DENABLE_PBSAM=OFF -DENABLE_PBAM=OFF -DENABLE_PYTHON=OFF -DBUILD_SHARED_LIBS=OFF -DCMAKE_C_FLAGS="-fPIC"'
test-name :

- born

- geoflow
- actin-dimer-auto
- actin-dimer-parallel
- alkanes
- FKBP
- hca-bind
- ion-pmf
- ion-protein
- ionize
- pka-lig
- point-pmf
- solv
- protein-rn
steps:
  - uses: actions/checkout@v1
  - name: Set up Python
    uses: actions/setup-python@v1
    with:
      python-version: ${{ matrix.python-version }}
  - name: Prereqs
    uses: mstksg/get-package@v1
    with:
      apt-get: bison flex swig libreadline-dev
  - name: Build and Install
    run: |
      echo "==================================== WHERE AM I ==================================== "
      pwd
      # Make the install directory
      mkdir -p $HOME/local

      echo "==================================== VERSIONS: ==================================== "
      echo "==================================== PYTHON VERSION"
      python -c "import sys; print(sys.version)"
      echo "==================================== CMAKE VERSION"
      cmake --version
      echo "==================================== Gcc VERSION"
      gcc --version
      echo "==================================== G++ VERSION"
      g++ --version
      echo "==================================== SWIG VERSION"
      swig -version

      echo "==================================== Install Python requirements ==================================== "
      pip3 install -U pip
      pip3 install -U pytest
      pip3 install -U virtualenv
      pip3 install -U numpy
      pip3 install -r pdb2pqr/requirements.txt

      # Just build APBS for now
      echo "==================================== PWD FOR TOP DIR ==================================== "
      pwd

      echo "==================================== Get External SubModules ==================================== "
      git submodule init
      git submodule update
      mkdir build
      cd build
      cmake ..
      make VERBOSE=1
      cd ..

      cd apbs
      echo "==================================== PWD FOR APBS src==================================== "
      pwd
      mkdir build
      cd build
      echo "==================================== BUILD DIR ==================================== "
      pwd

      echo "==================================== RUN CMAKE ==================================== "
      pwd
      cmake ${{ matrix.cflag-options }} -DCMAKE_INSTALL_PREFIX:PATH=$HOME/local .. || exit 1

      echo "==================================== RUN MAKE ==================================== "
      pwd
      VERBOSE=1 make -j 1 install

tests:

name: Test Code

needs: build

runs-on: ${{ matrix.os }}

steps:

- name: Run the tests

run: |

# Assume we are in the User's home directory where the top of the repository

echo "==================================== LOOK for APBS binary ==================================== "

#pwd

#echo find $HOME -type f -name apbs

#find $HOME -type f -name apbs

echo find $HOME -type f -name libmaloc.so

find $HOME -type f -name libmaloc*

echo cd apbs/tests

cd apbs/tests

echo pwd

pwd

echo ls

ls

echo bash run_travis_test.sh $HOME/local/bin ${{ matrix.test-name }}

bash run_travis_test.sh $HOME/local/bin ${{ matrix.test-name }}